STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM4Transglutaminase 4. (708 aa)    
Predicted Functional Partners:
F13B
Coagulation factor XIII B chain-like.
    
 0.883
F2
Coagulation factor II, thrombin.
     
 0.790
SERPINE2
Serpin family E member 2.
     
 0.596
CHUK
Component of inhibitor of nuclear factor kappa B kinase complex.
    
  0.590
FGA
Fibrinogen alpha chain.
    
 0.586
PROC
Protein C, inactivator of coagulation factors Va and VIIIa.
     
 0.577
SERPIND1
Serpin family D member 1.
     
 0.575
SERPINC1
Serpin family C member 1.
     
 0.567
ZNF408
Zinc finger protein 408.
    
  0.567
FGG
Fibrinogen gamma chain.
    
 0.522
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.