STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DRGXDorsal root ganglia homeobox. (157 aa)    
Predicted Functional Partners:
SRF
Serum response factor.
    
 0.575
LDB1
LIM domain binding 1.
    
 0.573
LDB2
LIM domain binding 2.
    
 0.573
KRCC1
Lysine rich coiled-coil 1.
      
 0.522
PRDM12
PR/SET domain 12.
    
 
 0.480
EN2
Engrailed homeobox 2.
    
 0.462
AEBP2
AE binding protein 2.
    
 
 0.461
LHX3
LIM homeobox 3.
    
 0.444
LHX4
LIM homeobox 4.
    
 0.444
AAMP
Angio associated migratory cell protein.
      
 0.438
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.