STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF488Zinc finger protein 488. (544 aa)    
Predicted Functional Partners:
BHLHE22
Basic helix-loop-helix family member e22.
   
  
 0.584
KMT5A
Lysine methyltransferase 5A.
    
 0.572
LOC106890714
Histone-lysine N-methyltransferase SETMAR.
    
 0.550
KMT5B
Lysine methyltransferase 5B.
     
 0.538
DOT1L
DOT1 like histone lysine methyltransferase.
     
 0.519
CAMKMT
Calmodulin-lysine N-methyltransferase.
     
 0.512
SH3RF3
SH3 domain containing ring finger 3.
    
 0.511
NOX4
NADPH oxidase 4.
   
 0.510
DUOX2
Dual oxidase 2-like.
   
 0.510
NOX1
NADPH oxidase 1.
   
 0.510
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.