STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAR2AAR2 splicing factor. (382 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
    
 0.999
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 0.998
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.993
DDX23
DEAD-box helicase 23.
    
 0.985
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
     
 0.957
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.956
ASCC3
Activating signal cointegrator 1 complex subunit 3.
    
 0.943
ECD
Ecdysoneless cell cycle regulator.
    
 
 0.943
ENSCPUP00000023645
annotation not available
    
 0.943
ENSCPUP00000023951
annotation not available
    
 0.943
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.