STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000013255annotation not available (191 aa)    
Predicted Functional Partners:
ENSCPUP00000025152
annotation not available
  
 
 0.947
ALDH18A1
Aldehyde dehydrogenase 18 family member A1.
    
 0.937
OAT
Ornithine aminotransferase.
  
 
 0.932
GOT2
Glutamic-oxaloacetic transaminase 2.
   
 0.925
GOT1
Glutamic-oxaloacetic transaminase 1.
   
 0.921
CS
Citrate synthase.
   
 0.916
BCAT1
Branched chain amino acid transaminase 1.
  
 
 0.904
LOC106887820
Proline dehydrogenase 1, mitochondrial-like.
  
 
 0.897
FDXR
Ferredoxin reductase.
  
 0.896
FADS6
Fatty acid desaturase 6.
  
 0.896
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.