STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106894171Mesoderm posterior protein 1-like. (321 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.610
LDB2
LIM domain binding 2.
    
 0.610
TCF3
Transcription factor 3.
    
 0.591
TCF4
Transcription factor 4.
    
 0.591
ENSCPUP00000017890
annotation not available
    
 0.591
TCF12
Transcription factor 12.
    
 0.591
GATA5
GATA binding protein 5.
   
 0.492
GATA4
GATA binding protein 4.
   
 0.492
GATA6
GATA binding protein 6.
   
 0.459
TRPS1
Transcriptional repressor GATA binding 1.
   
 0.436
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.