STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMSDAminocarboxymuconate semialdehyde decarboxylase. (336 aa)    
Predicted Functional Partners:
HAAO
3-hydroxyanthranilate 3,4-dioxygenase.
  
 
 0.971
SENP8
SUMO peptidase family member, NEDD8 specific.
    
 0.930
ALDH8A1
Aldehyde dehydrogenase 8 family member A1.
 
 
 0.905
SORD
Sorbitol dehydrogenase.
  
 
  0.894
MLYCD
malonyl-CoA decarboxylase.
    
 0.861
PIGL
Phosphatidylinositol glycan anchor biosynthesis class L.
    
  0.847
ENSCPUP00000015552
annotation not available
    
  0.839
LOC106895560
Adrenodoxin, mitochondrial-like.
    
 0.812
FDX1
Ferredoxin 1.
    
 0.812
KYNU
Kynureninase-like.
 
  
 0.807
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.