STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1ARasGEF domain family member 1A. (491 aa)    
Predicted Functional Partners:
RAPGEF2
Rap guanine nucleotide exchange factor 2.
    
 
0.662
SOS1
SOS Ras/Rac guanine nucleotide exchange factor 1.
    
0.651
SOS2
SOS Ras/Rho guanine nucleotide exchange factor 2.
    
0.583
CUX2
Cut like homeobox 2.
   
  
 0.540
RASGRP1
RAS guanyl releasing protein 1.
    
0.519
GRAP
GRB2 related adaptor protein.
   
 
  0.512
RASGRP3
RAS guanyl releasing protein 3.
    
0.504
RAPGEF6
Rap guanine nucleotide exchange factor 6.
    
0.504
RAPGEF1
Rap guanine nucleotide exchange factor 1.
    
0.503
RALGPS1
Ral GEF with PH domain and SH3 binding motif 1.
   
0.492
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.