STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC35A1Solute carrier family 35 member A1. (319 aa)    
Predicted Functional Partners:
XPNPEP1
X-prolyl aminopeptidase 1.
    
 0.511
PEPD
Peptidase D.
    
 0.511
XPNPEP2
X-prolyl aminopeptidase 2.
    
 0.511
XPNPEP3
X-prolyl aminopeptidase 3.
    
 0.511
FASTKD3
FAST kinase domains 3.
    
 0.511
SLC35C1
Solute carrier family 35 member C1.
   
  
 0.475
GSS
Glutathione synthetase.
   
 
  0.453
SPPL3
Signal peptide peptidase like 3.
      
 0.438
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.