STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF608Zinc finger protein 608. (1507 aa)    
Predicted Functional Partners:
RCBTB2
RCC1 and BTB domain containing protein 2.
      
 0.528
RANBP3L
RAN binding protein 3 like.
      
 0.514
PYURF
Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y.
      
 0.508
TUBGCP4
Tubulin gamma complex associated protein 4.
      
 0.508
LOC106888392
Protein BEAN1-like.
      
 0.506
RERE
Arginine-glutamic acid dipeptide repeats.
   
 
 0.465
ZZZ3
Zinc finger ZZ-type containing 3.
    
 
 0.459
ZBTB40
Zinc finger and BTB domain containing 40.
   
  
 0.455
ZNF532
Zinc finger protein 532.
   
  
 0.442
SHPRH
SNF2 histone linker PHD RING helicase.
      
 0.437
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.