STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX2Sorting nexin 2. (518 aa)    
Predicted Functional Partners:
VPS35
VPS35 retromer complex component.
   
 0.997
VPS29
VPS29 retromer complex component.
   
 0.992
VPS26A
VPS26, retromer complex component A.
   
 0.992
SNX1
Sorting nexin 1.
  
 
0.991
VPS26B
VPS26, retromer complex component B.
   
 0.987
GAK
Cyclin G associated kinase.
   
 0.970
SNX27
Sorting nexin 27.
    
 0.970
SNX8
Sorting nexin 8.
    
0.957
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
 0.947
RAB7A
RAB7A, member RAS oncogene family.
    
 0.940
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.