STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLAUPlasminogen activator, urokinase. (433 aa)    
Predicted Functional Partners:
VTN
Vitronectin.
    
 0.988
THBD
Thrombomodulin.
   
 0.944
PLAT
Plasminogen activator, tissue type.
  
0.943
CTSB
Cathepsin B.
     
 0.942
TNR
Tenascin R.
    
  0.928
TNN
Tenascin N.
    
  0.925
HTRA2
HtrA serine peptidase 2.
    
 0.923
TNC
Tenascin C.
   
  0.919
SERPINE2
Serpin family E member 2.
  
 0.847
LOC106893088
Plasminogen-like.
  
  
0.838
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.