STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106887667RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (134 aa)    
Predicted Functional Partners:
WDR82
WD repeat domain 82.
   
 0.999
SYMPK
Symplekin.
   
 0.999
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.998
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.998
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.998
CSTF2
Cleavage stimulation factor subunit 2.
   
 0.998
WDR33
WD repeat domain 33.
    
 0.998
ENSCPUP00000018951
annotation not available
    
 0.987
ENSCPUP00000023635
annotation not available
    
 0.987
PAPOLA
poly(A) polymerase alpha.
    
 0.984
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.