STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOD1Nucleotide binding oligomerization domain containing 1. (950 aa)    
Predicted Functional Partners:
RIPK2
Receptor interacting serine/threonine kinase 2.
   
 0.951
LOC106888241
Receptor-interacting serine/threonine-protein kinase 2-like.
   
 0.951
ATG16L1
Autophagy related 16 like 1.
    
 0.946
MAVS
Mitochondrial antiviral signaling protein.
    
 0.922
SUGT1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.906
ATG5
Autophagy related 5.
     
 0.863
ATG12
Autophagy related 12.
     
 0.849
ERBIN
Erbb2 interacting protein.
    
 0.847
LRRC7
Leucine rich repeat containing 7.
    
 0.847
RPS27A
Ribosomal protein S27a.
    
  0.825
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.