STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000014673annotation not available (455 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interaction domain 4A.
    
 0.710
ARID4B
AT-rich interaction domain 4B.
    
 0.710
ENSCPUP00000000773
annotation not available
   
 0.706
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.652
COLEC10
Collectin subfamily member 10.
  
 
  0.646
ENSCPUP00000004492
annotation not available
  
 
  0.631
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.628
COLEC11
Collectin subfamily member 11.
  
 
  0.625
ENSCPUP00000024460
annotation not available
  
 
  0.625
ENSCPUP00000021424
annotation not available
  
 
  0.602
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.