STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL20Mitochondrial ribosomal protein L20. (149 aa)    
Predicted Functional Partners:
MRPL12
Mitochondrial ribosomal protein L12.
  
 
 0.999
ENSCPUP00000002090
annotation not available
  
 
 0.999
RPS3
Ribosomal protein S3.
   
 
 0.999
ENSCPUP00000003125
annotation not available
  
 
 0.999
MRPL36
Mitochondrial ribosomal protein L36.
  
 
 0.999
ENSCPUP00000009731
annotation not available
   
 
 0.999
MRPS9
Mitochondrial ribosomal protein S9.
  
 
 0.999
RPS18
Ribosomal protein S18.
  
 
 0.999
MRPL13
Mitochondrial ribosomal protein L13.
  
 
 0.999
IMP3
U3 small nucleolar ribonucleoprotein protein IMP3-like.
  
 
 0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.