STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H3Zinc finger CCCH-type containing 3. (979 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specific factor 2.
    
 0.981
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.981
CSTF1
Cleavage stimulation factor subunit 1.
    
 0.978
CSTF2
Cleavage stimulation factor subunit 2.
    
 0.978
NUDT21
Nudix hydrolase 21.
    
 0.978
CLP1
Cleavage and polyadenylation factor I subunit 1.
    
 0.975
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 0.924
ENSCPUP00000007456
annotation not available
    
 0.924
ENSCPUP00000018951
annotation not available
   
 0.924
ENSCPUP00000023635
annotation not available
   
 0.924
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.