STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KATNB1Katanin regulatory subunit B1. (657 aa)    
Predicted Functional Partners:
KATNA1
Katanin catalytic subunit A1.
   
 0.998
KATNAL1
Katanin catalytic subunit A1 like 1.
   
 0.996
KATNBL1
Katanin regulatory subunit B1 like 1.
    
0.979
KATNAL2
Katanin catalytic subunit A1 like 2.
   
 0.967
PSMC5
Proteasome 26S subunit, ATPase 5.
   
 0.784
PSMC1
Proteasome 26S subunit, ATPase 1.
    
 0.777
ENSCPUP00000006277
annotation not available
    
 0.777
ENSCPUP00000006278
annotation not available
    
 0.777
ATAD2
ATPase family AAA domain containing 2.
    
 0.777
GK
Glycerol kinase.
    
 0.777
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.