STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPEF1Sperm flagellar 1. (229 aa)    
Predicted Functional Partners:
PLA2G4A
Phospholipase A2 group IVA.
    
 0.700
RHOT1
Ras homolog family member T1.
   
 0.599
ENSCPUP00000010952
annotation not available
   
 0.599
RHOT2
Ras homolog family member T2.
   
 0.599
RIPK4
Receptor interacting serine/threonine kinase 4.
    
 0.588
SPEF2
Sperm flagellar 2.
    
 
 0.574
CASK
Calcium/calmodulin dependent serine protein kinase.
   
 0.567
ENSCPUP00000016887
annotation not available
   
 0.567
EFHC1
EF-hand domain containing 1.
  
 
 
 0.559
RIBC2
RIB43A domain with coiled-coils 2.
   
 0.522
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.