STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMP6Charged multivesicular body protein 6. (134 aa)    
Predicted Functional Partners:
VPS25
Vacuolar protein sorting 25 homolog.
   
 0.999
SNF8
Vacuolar-sorting protein SNF8.
    
 0.998
VPS36
Vacuolar protein sorting 36 homolog.
    
 0.994
LOC106902937
Charged multivesicular body protein 3.
    
 0.993
CHMP2A
Charged multivesicular body protein 2A.
   
 0.992
VPS4B
Vacuolar protein sorting 4 homolog B.
    
 0.988
VPS4A
Vacuolar protein sorting 4 homolog A.
    
 0.988
VPS28
Vacuolar protein sorting-associated protein 28 homolog.
   
 0.986
CHMP4B
Charged multivesicular body protein 4B.
    
 0.986
CHMP4C
Charged multivesicular body protein 4C.
    
 0.986
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.