STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXA1Homeobox A1. (333 aa)    
Predicted Functional Partners:
HOXB1
Homeobox B1.
  
0.867
PBX4
PBX homeobox 4.
    
 0.744
PBX3
PBX homeobox 3.
    
 0.744
PBX1
PBX homeobox 1.
    
 0.744
HOXC10
Homeobox C10.
  
 
 
0.458
HOXA13
Homeobox A13.
    
 
0.427
HOXB13
Homeobox B13.
  
 
 
0.419
NR5A2
Nuclear receptor subfamily 5 group A member 2.
    
 0.415
NR5A1
Nuclear receptor subfamily 5 group A member 1.
    
 0.415
HOXD10
Homeobox D10.
    
 
0.412
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.