STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA1Spindle and kinetochore associated complex subunit 1. (301 aa)    
Predicted Functional Partners:
SKA3
Spindle and kinetochore associated complex subunit 3.
   
 0.998
SKA2
Spindle and kinetochore associated complex subunit 2.
   
 0.998
NDC80
NDC80 kinetochore complex component.
   
 0.989
BUB1B
BUB1 mitotic checkpoint serine/threonine kinase B.
   
 
 0.963
PLK1
Serine/threonine-protein kinase PLK1-like.
   
 
 0.940
BUB1
BUB1 mitotic checkpoint serine/threonine kinase.
   
 
 0.933
ENSCPUP00000009681
annotation not available
   
 
  0.928
CDK1
Cyclin dependent kinase 1.
   
 
 0.895
NUF2
NUF2 component of NDC80 kinetochore complex.
   
  
 0.878
PLK4
Polo like kinase 4.
   
 
 0.834
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.