STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UTP15UTP15 small subunit processome component. (520 aa)    
Predicted Functional Partners:
WDR36
WD repeat domain 36.
   
 0.999
UTP20
UTP20 small subunit processome component.
   
 0.999
UTP6
U3 small nucleolar RNA-associated protein 6 homolog.
   
 0.999
UTP18
UTP18 small subunit processome component.
   
 0.999
WDR43
WD repeat domain 43.
   
 0.999
NOP56
NOP56 ribonucleoprotein.
   
 0.999
RRP9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
  
 0.999
NOL10
Nucleolar protein 10.
   
 0.999
WDR3
WD repeat domain 3.
   
0.999
DCAF13
DDB1 and CUL4 associated factor 13.
   
  0.999
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.