STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IST1IST1 factor associated with ESCRT-III. (367 aa)    
Predicted Functional Partners:
VTA1
Vesicle trafficking 1.
   
 
 0.977
CHMP5
Charged multivesicular body protein 5.
    
 
 0.977
VPS4B
Vacuolar protein sorting 4 homolog B.
   
 0.974
VPS4A
Vacuolar protein sorting 4 homolog A.
   
 0.974
CHMP2A
Charged multivesicular body protein 2A.
    
 0.954
CHMP1A
Charged multivesicular body protein 1A.
    
 
 0.950
CHMP1B
Charged multivesicular body protein 1B.
    
 
 0.950
LOC106902937
Charged multivesicular body protein 3.
    
 0.948
CHMP4B
Charged multivesicular body protein 4B.
    
 0.932
CHMP4C
Charged multivesicular body protein 4C.
    
 0.932
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.