STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPY19L3Dpy-19 like C-mannosyltransferase 3. (716 aa)    
Predicted Functional Partners:
CASC1
Cancer susceptibility 1.
   
    0.549
TSR3
TSR3 ribosome maturation factor.
      
 0.542
CCDC126
Coiled-coil domain containing 126.
      
 0.477
TSR1
TSR1 ribosome maturation factor.
      
 0.459
CCDC62
Coiled-coil domain containing 62.
      
 0.428
ZPBP
Zona pellucida binding protein.
   
  
 0.411
SPATA16
Spermatogenesis associated 16.
      
 0.404
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.