STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106888360Uncharacterized protein F13E9.13, mitochondrial-like. (285 aa)    
Predicted Functional Partners:
LTV1
LTV1 ribosome biogenesis factor.
    
 0.871
BYSL
Bystin like.
    
 0.815
RIOK2
RIO kinase 2.
    
 0.812
TSR1
TSR1 ribosome maturation factor.
    
 0.751
C19orf12
Chromosome unknown open reading frame, human C19orf12.
 
      0.735
NOB1
NIN1 (RPN12) binding protein 1 homolog.
    
 0.732
RPS3
Ribosomal protein S3.
    
 0.731
RPS2
40S ribosomal protein S2.
    
 0.712
PER2
Period circadian regulator 2.
    
 0.709
PER3
Period circadian regulator 3.
    
 0.709
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.