STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPOUT1SPOUT domain containing methyltransferase 1. (377 aa)    
Predicted Functional Partners:
UTP11
UTP11 small subunit processome component.
   
   0.820
NOC4L
Nucleolar complex associated 4 homolog.
   
    0.793
WDR36
WD repeat domain 36.
   
    0.786
PISD
Phosphatidylserine decarboxylase proenzyme.
 
      0.761
GAR1
GAR1 ribonucleoprotein.
   
   0.753
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
   0.734
SDAD1
SDA1 domain containing 1.
   
   0.731
RPF2
Ribosome production factor 2 homolog.
   
   0.726
DKC1
H/ACA ribonucleoprotein complex subunit 4.
  
 
 0.696
TRUB1
TruB pseudouridine synthase family member 1.
  
 
 0.696
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.