STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB3LIM domain binding 3. (742 aa)    
Predicted Functional Partners:
EHBP1
EH domain binding protein 1.
    
 0.889
SMTN
Smoothelin.
   
 
  0.870
PDLIM4
PDZ and LIM domain 4.
    
 
0.849
ENSCPUP00000002016
annotation not available
    
  0.807
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
    
0.782
PDLIM3
PDZ and LIM domain 3.
   
 
0.760
PDLIM1
PDZ and LIM domain 1.
   
  0.743
IFT57
Intraflagellar transport 57.
    
 0.691
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.678
IFT80
Intraflagellar transport 80.
    
 0.660
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.