STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBL1XR1Transducin beta like 1 X-linked receptor 1. (513 aa)    
Predicted Functional Partners:
KMT2E
Lysine methyltransferase 2E.
    
 0.962
NCOR2
Nuclear receptor corepressor 2.
   
 0.933
NCOR1
Nuclear receptor corepressor 1.
   
 0.933
CTNNB1
Catenin beta 1.
  
 0.930
HDAC3
Histone deacetylase 3.
   
 0.902
SKP1
S-phase kinase associated protein 1.
    
 0.876
PHF20
PHD finger protein 20.
    
 0.871
HDAC8
Histone deacetylase 8.
   
 0.868
HDAC2
Histone deacetylase 2.
   
 0.868
HDAC1
Histone deacetylase 1.
   
 0.868
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.