STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin 20. (917 aa)    
Predicted Functional Partners:
ENSCPUP00000016165
annotation not available
 
  
 0.846
LIX1L
Limb and CNS expressed 1 like.
   
 0.732
RERE
Arginine-glutamic acid dipeptide repeats.
    
 0.713
FRMD1
FERM domain containing 1.
    
 0.573
FRMD6
FERM domain containing 6.
    
 0.573
PCDH7
Protocadherin 7.
    
 
0.449
CSNK1D
Casein kinase 1 delta.
    
  0.445
VRK1
VRK serine/threonine kinase 1.
    
  0.445
TTBK1
Tau tubulin kinase 1.
    
  0.445
ENSCPUP00000010043
annotation not available
    
  0.445
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.