STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDHD2Haloacid dehalogenase-like hydrolase domain-containing protein 2. (292 aa)    
Predicted Functional Partners:
EPHX2
Epoxide hydrolase 2.
  
 
 0.898
ATP5PB
ATP synthase peripheral stalk-membrane subunit b.
   
 
 0.866
ATP5F1C
ATP synthase F1 subunit gamma.
  
 
 0.803
ATP5F1D
ATP synthase F1 subunit delta.
  
 
 0.798
ATP6V0B
ATPase H+ transporting V0 subunit b.
   
 
 0.792
ATP6V0C
ATPase H+ transporting V0 subunit c.
   
 
 0.792
ATP5PF
ATP synthase peripheral stalk subunit F6.
   
 
 0.791
ATP6V1E1
ATPase H+ transporting V1 subunit E1.
   
 
 0.791
ATP6V1H
ATPase H+ transporting V1 subunit H.
   
 
  0.789
ATP5ME
ATP synthase membrane subunit e.
     
 0.788
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.