STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC20A1Solute carrier family 20 member 1. (678 aa)    
Predicted Functional Partners:
FLAD1
Flavin adenine dinucleotide synthetase 1.
  
  
 0.532
GALE
UDP-glucose 4-epimerase-like.
     
 0.469
CS
Citrate synthase.
  
  
 0.456
OCA2
OCA2 melanosomal transmembrane protein.
  
  
 0.453
SRP54
Signal recognition particle 54.
     
 0.450
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.441
GBE1
1,4-alpha-glucan branching enzyme 1.
     
 0.439
SLC37A4
Solute carrier family 37 member 4.
      
 0.435
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
  
 0.433
MPP6
Membrane palmitoylated protein 6.
  
   0.426
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.