STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSUN5NOP2/Sun RNA methyltransferase 5. (465 aa)    
Predicted Functional Partners:
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 0.906
NIP7
Nucleolar pre-rRNA processing protein NIP7.
  
 0.905
EBNA1BP2
EBNA1 binding protein 2.
   
 0.904
RPF1
Ribosome production factor 1 homolog.
   
 0.896
BRIX1
Biogenesis of ribosomes BRX1.
   
 0.886
GTPBP4
GTP binding protein 4.
   
 0.886
NIFK
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.882
WDR12
WD repeat domain 12.
   
 0.879
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.875
RSL24D1
Ribosomal L24 domain containing 1.
   
 0.875
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.