STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN13Tetraspanin 13. (203 aa)    
Predicted Functional Partners:
MST1R
Macrophage stimulating 1 receptor.
    
 0.718
MET
MET proto-oncogene, receptor tyrosine kinase.
    
 0.707
ANKMY2
Ankyrin repeat and MYND domain containing 2.
      
 0.513
SNX13
Sorting nexin 13.
    
 
 0.486
PHF20L1
PHD finger protein 20 like 1.
     
 0.450
SLC30A5
Solute carrier family 30 member 5.
      
 0.444
PDGFB
Platelet derived growth factor subunit B.
    
  0.444
ZNF830
Zinc finger protein 830.
      
 0.430
TMEM41B
Transmembrane protein 41B.
      
 0.430
IFNGR1
Interferon gamma receptor 1.
    
  0.407
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.