STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle associated membrane protein 8. (99 aa)    
Predicted Functional Partners:
STX17
Syntaxin 17.
    
 0.999
STX6
Syntaxin 6.
    
 0.999
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.998
SNAP29
Synaptosome associated protein 29.
   
 0.998
BET1
Bet1 golgi vesicular membrane trafficking protein.
    
 0.998
STX8
Syntaxin 8.
    
 0.997
GOSR1
Golgi SNAP receptor complex member 1.
    
 0.997
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.995
SNAP23
Synaptosome associated protein 23.
   
 0.986
STX18
Syntaxin 18.
    
 0.983
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.