STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OMA1OMA1 zinc metallopeptidase. (480 aa)    
Predicted Functional Partners:
OPA1
OPA1 mitochondrial dynamin like GTPase.
    
 0.894
ICMT
Isoprenylcysteine carboxyl methyltransferase.
   
 0.885
FNTA
Farnesyltransferase, CAAX box, alpha.
     
 0.871
LOC106891948
Protein farnesyltransferase subunit beta-like.
     
 0.778
CHURC1
Churchill domain containing 1.
     
 0.778
YME1L1
YME1 like 1 ATPase.
  
 
 0.761
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
  
 
 0.719
ATP23
ATP23 metallopeptidase and ATP synthase assembly factor homolog.
    
 
 0.675
ENSCPUP00000021415
annotation not available
  
  
 0.671
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
 0.659
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.