STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMOD4Tropomodulin 4. (305 aa)    
Predicted Functional Partners:
GPS1
G protein pathway suppressor 1.
    
  0.832
COPS3
COP9 signalosome subunit 3.
    
  0.824
HSPA5
Heat shock protein family A (Hsp70) member 5.
    
  0.800
LOC106895973
Band 4.1-like protein 2.
    
 0.800
COPS7B
COP9 signalosome subunit 7B.
    
  0.794
COPS5
COP9 signalosome subunit 5.
    
  0.793
DCAF1
DDB1 and CUL4 associated factor 1.
    
  0.793
COPS7A
COP9 signalosome subunit 7A.
    
  0.791
ATP5F1A
ATP synthase F1 subunit alpha.
    
  0.790
BASP1
Brain abundant membrane attached signal protein 1.
    
  0.770
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.