STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106885750Amine oxidase [flavin-containing] B-like. (521 aa)    
Predicted Functional Partners:
GLYR1
Glyoxylate reductase 1 homolog.
    
 
 0.946
COMT
catechol-O-methyltransferase.
    
 0.903
DDC
Dopa decarboxylase.
    
 0.885
ENSCPUP00000000935
annotation not available
    
 0.880
DBH
Dopamine beta-hydroxylase.
     
 0.879
RCOR3
REST corepressor 3.
    
 0.877
RCOR1
REST corepressor 1.
    
 0.877
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.859
AANAT
Aralkylamine N-acetyltransferase.
     
 0.857
ALDH9A1
Aldehyde dehydrogenase 9 family member A1.
   
 0.851
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.