STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCPUP00000016990annotation not available (368 aa)    
Predicted Functional Partners:
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.802
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.795
MRPL13
Mitochondrial ribosomal protein L13.
   
 
 0.781
MTG1
Mitochondrial ribosome associated GTPase 1.
  
 
 0.776
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.774
MRPL17
Mitochondrial ribosomal protein L17.
  
 
 0.768
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.760
MRPL43
Mitochondrial ribosomal protein L43.
    
   0.727
ENSCPUP00000009731
annotation not available
   
   0.707
ENSCPUP00000010135
annotation not available
  
 
 0.706
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.