STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZSWIM8Zinc finger SWIM-type containing 8. (1829 aa)    
Predicted Functional Partners:
CUL2
Cullin 2.
     
 0.945
RBX1
Ring-box 1.
     
 0.925
ZER1
Zyg-11 related cell cycle regulator.
     
 0.922
APPBP2
Amyloid beta precursor protein binding protein 2.
     
 0.922
ELOB
Elongin B.
    
 0.892
CUL3
Cullin 3.
    
 0.881
ELOC
Elongin C.
    
 0.816
ARIH1
Ariadne RBR E3 ubiquitin protein ligase 1.
   
  0.796
ZSWIM5
Zinc finger SWIM-type containing 5.
     
0.752
ZSWIM6
Zinc finger SWIM-type containing 6.
     
0.752
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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