STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF11Ring finger protein 11. (124 aa)    
Predicted Functional Partners:
ENSCPUP00000003594
annotation not available
    
 0.909
ITCH
Itchy E3 ubiquitin protein ligase.
    
 
 0.877
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 
 0.830
TAX1BP1
Tax1 binding protein 1.
   
 
 0.770
TNFAIP3
TNF alpha induced protein 3.
   
 
 0.768
ENSCPUP00000011075
annotation not available
    
 0.736
RPS27A
Ribosomal protein S27a.
    
 0.708
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
   
 0.657
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.652
WWP1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.642
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.