STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THBS2Thrombospondin 2. (1182 aa)    
Predicted Functional Partners:
CD36
CD36 molecule.
   
 0.937
MMP9
Matrix metallopeptidase 9.
   
 0.912
CD47
CD47 molecule.
   
 
 0.894
THBS1
Thrombospondin 1.
  
 
0.883
ENSCPUP00000006226
annotation not available
    
 0.882
ITGB5
Integrin subunit beta 5.
   
 0.881
ITGB3
Integrin subunit beta 3.
   
 0.879
ITGB1
Integrin subunit beta 1.
   
 0.877
ITGB4
Integrin subunit beta 4.
   
 0.875
ITGB6
Integrin subunit beta 6.
    
 0.870
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.