STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C3orf18Chromosome unknown open reading frame, human C3orf18. (155 aa)    
Predicted Functional Partners:
PAM16
Presequence translocase associated motor 16.
   
 0.945
TIMM23B
Translocase of inner mitochondrial membrane 23 homolog B.
   
 0.915
HSPA9
Heat shock protein family A (Hsp70) member 9.
    
 0.901
TIMM17A
Translocase of inner mitochondrial membrane 17A.
    
 0.896
TIMM44
Translocase of inner mitochondrial membrane 44.
    
 0.883
TIMM21
Translocase of inner mitochondrial membrane 21.
   
 0.853
ENSCPUP00000009852
annotation not available
   
 0.843
GRPEL1
GrpE like 1, mitochondrial.
   
 0.788
ROMO1
Reactive oxygen species modulator 1.
   
 0.777
PIKFYVE
Phosphoinositide kinase, FYVE-type zinc finger containing.
     
 0.742
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.