STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCOCShort coiled-coil protein. (133 aa)    
Predicted Functional Partners:
ARL1
ADP ribosylation factor like GTPase 1.
   
 
 0.881
FEZ2
Fasciculation and elongation protein zeta 2.
   
 
 0.855
FEZ1
Fasciculation and elongation protein zeta 1.
   
 
 0.805
ARFRP1
ADP ribosylation factor related protein 1.
      
 0.544
WAC
WW domain containing adaptor with coiled-coil.
      
 0.541
ARL3
ADP ribosylation factor like GTPase 3.
     
 0.526
SLC66A2
Solute carrier family 66 member 2.
      
 0.519
PSMC5
Proteasome 26S subunit, ATPase 5.
    
   0.519
GCH1
GTP cyclohydrolase 1.
      
 0.516
PRPF38B
pre-mRNA processing factor 38B.
      
 0.516
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.