STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA5Spermatogenesis associated 5. (884 aa)    
Predicted Functional Partners:
UBXN7
UBX domain protein 7.
   
 0.999
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.955
DERL1
Derlin 1.
   
 0.950
UBXN6
UBX domain protein 6.
    
 0.937
ANKZF1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 0.934
UBXN4
UBX domain protein 4.
    
 0.931
ERLEC1
Endoplasmic reticulum lectin 1.
    
 0.930
FAF1
Fas associated factor 1.
   
 0.927
YOD1
YOD1 deubiquitinase.
   
 0.925
PSMD2
Proteasome 26S subunit, non-ATPase 2.
   
 0.924
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.