STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106893651Uncharacterized LOC106893651. (500 aa)    
Predicted Functional Partners:
NANS
N-acetylneuraminate synthase.
     
 0.695
VAMP1
Vesicle associated membrane protein 1.
   
 0.683
LOC106902636
Vesicle-associated membrane protein 2-like.
   
 0.683
GNE
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
     
 0.680
VAMP3
Vesicle associated membrane protein 3.
    
 0.591
SNAP25
Synaptosome associated protein 25.
   
 0.578
VAMP8
Vesicle associated membrane protein 8.
    
 0.558
VAMP4
Vesicle associated membrane protein 4.
    
 0.558
HEXA
Hexosaminidase subunit alpha.
   
 
  0.547
M1AP
Meiosis 1 associated protein.
     
 0.532
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.