STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA5LLebercilin LCA5 like. (525 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.877
NME8
NME/NM23 family member 8.
    
 0.737
ENSCPUP00000015514
annotation not available
   
   0.606
GNAZ
G protein subunit alpha z.
    
  0.603
HOMER2
Homer scaffold protein 2.
    
  0.600
GABBR2
Gamma-aminobutyric acid type B receptor subunit 2.
    
 0.557
GABBR1
Gamma-aminobutyric acid type B receptor subunit 1.
    
 0.557
TRIO
Trio Rho guanine nucleotide exchange factor.
    
  0.549
RIPK4
Receptor interacting serine/threonine kinase 4.
    
  0.546
RNASEL
Ribonuclease L.
    
  0.546
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.