STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1QTNF4C1q and TNF related 4. (388 aa)    
Predicted Functional Partners:
ENSCPUP00000000773
annotation not available
    
  0.808
ANKRD24
Ankyrin repeat domain 24.
    
 0.613
C1QC
Complement C1q C chain.
    
 
0.530
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.494
RPS27A
Ribosomal protein S27a.
    
  0.492
LOC106888290
Tubulin beta chain-like.
    
  0.491
LOC106888291
Tubulin beta chain-like.
    
  0.491
ENSCPUP00000011075
annotation not available
    
  0.461
PLA2G4A
Phospholipase A2 group IVA.
     
 0.461
SETDB1
Histone-lysine N-methyltransferase SETDB1-like.
    
  0.458
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.