STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFRKBNuclear factor related to kappaB binding protein. (1293 aa)    
Predicted Functional Partners:
ACTR5
Actin related protein 5.
   
 0.997
INO80
INO80 complex ATPase subunit.
   
 0.992
UCHL5
Ubiquitin C-terminal hydrolase L5.
    
 0.988
BAP1
BRCA1 associated protein 1.
    
 0.985
ACTR8
Actin related protein 8.
   
 0.981
RUVBL1
RuvB like AAA ATPase 1.
    
 0.980
MCRS1
Microspherule protein 1.
    
 0.969
YY1
YY1 transcription factor.
    
 0.967
INO80C
INO80 complex subunit C.
    
 0.965
RUVBL2
ruvB-like 2.
    
 0.955
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.