STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX58DExD/H-box helicase 58. (796 aa)    
Predicted Functional Partners:
MAVS
Mitochondrial antiviral signaling protein.
    
 0.988
DHX58
DExH-box helicase 58.
   
0.949
OASL
2'-5'-oligoadenylate synthase 1-like.
   
 0.933
EIF2AK2
Eukaryotic translation initiation factor 2 alpha kinase 2.
   
 0.921
RPS27A
Ribosomal protein S27a.
    
 0.898
ATG12
Autophagy related 12.
    
 0.891
ATG5
Autophagy related 5.
    
 0.891
USP18
Ubiquitin specific peptidase 18.
   
 
 0.879
TRIM25
Tripartite motif containing 25.
    
 0.873
TOP3A
DNA topoisomerase III alpha.
   
 0.851
Your Current Organism:
Calidris pugnax
NCBI taxonomy Id: 198806
Other names: C. pugnax, Machetes pugnax, Pavoncella pugnax, Philomachus pugnax, ruff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.